Publications
Ghesquière B, Buyl L, Demol H, Damme JV, Staes A, Timmerman E, Vandekerckhove J, Gevaert K.
A New Approach for Mapping Sialylated N-Glycosites in Serum Proteomes.
J Proteome Res. 2007 Oct 5; [in press] PMID: 17918875
Dirk Valkenborg, Gregoire Thomas, Luc Krols, Koen Kas, Tomasz Burzykowski
Rapid Communications in Mass Spectrometry
RCM-07-0361.R1, 2007
Gevaert K, Van Damme P, Ghesquiere B, Impens F, Martens L, Helsens K, Vandekerckhove J.
A la carte proteomics with an emphasis on gel-free techniques.
Proteomics 2007 Aug; 7(16):2698-718. PMID: 17640001
Denecker G, Hoste E, Gilbert B, Hochepied T, Ovaere P, Lippens S, Van den Broecke C, Van Damme P, D'Herde K, Hachem JP, Borgonie G, Presland RB, Schoonjans L, Libert C, Vandekerckhove J, Gevaert K, Vandenabeele P, Declercq W.
Caspase-14 protects against epidermal UVB photodamage and water loss.
Nat Cell Biol. 2007 Jun; 9(6):666-74. PMID: 17515931
Koen Sandra, Katleen Verleysen, Christine Labeur, Lies Vanneste, Filip D’hondt,
Gregoire Thomas, Koen Kas, Kris Gevaert, Joel Vandekerckhove, Pat Sandra
Combination of Cofradic and high-temperature extended column
length conventional liquid chromatography: a very efficient way to tackle complex protein samples, such as serum.
J.Sep.Sci. 2007 Mar; 30(5):658-68. PMID: 17461103
Aivaliotis M, Gevaert K, Falb M, Tebbe A, Konstantinidis K, Bisle B, Klein C, Martens L, Staes A, Timmerman E, Van Damme J, Siedler F, Pfeiffer F, Vandekerckhove J, Oesterhelt D.
Large-scale identification of N-terminal peptides in the halophilic archaea Halobacterium salinarum and Natronomonas pharaonis.
J Proteome Res. 2007 Jun; 6(6):2195-204. PMID: 17444671
Vande Walle L, Van Damme P, Lamkanfi M, Saelens X, Vandekerckhove J, Gevaert K, Vandenabeele P.
Proteome-wide Identification of HtrA2/Omi Substrates.
J Proteome Res. 2007 Mar; 6(3):1006-15. PMID: 17266347
Hanoulle X, Van Damme J, Staes A, Martens L, Goethals M, Vandekerckhove J, Gevaert K.
A new functional, chemical proteomics technology to identify purine nucleotide binding sites in complex proteomes.
J Proteome Res. 2006 Dec; 5(12):3438-45. PMID: 17137346
Gevaert K, Van Damme P, Ghesquiere B, Vandekerckhove J.
Protein processing and other modifications analyzed by diagonal peptide chromatography.
Biochim Biophys Acta. 2006 Dec; 1764(12):1801-10. Review. PMID: 17035109
Ghesquiere B, Van Damme J, Martens L, Vandekerckhove J, Gevaert K.
Proteome-wide characterization of N-glycosylation events by diagonal chromatography.
J Proteome Res. 2006 Sep; 5(9): 2438-47. PMID: 16944957
Katleen Verleysen, Christine Labeur, Luc Krols,
Koen De Cremer, and Koen Kas
Gel-Free Protein Biomarker Discovery in Serum Using the Cofradic™ Technology
American Biotechnology
Laboratory 2006 24(6): 10-11
Ghesquiere B, Goethals M, Van Damme J, Staes A, Timmerman E, Vandekerckhove J, Gevaert K.
Improved tandem mass spectrometric characterization of 3-nitrotyrosine sites in peptides.
Rapid Commun Mass Spectrom. 2006 20(19): 2885-93. PMID: 16941724
Gevaert K, Pinxteren J, Demol H, Hugelier K, Staes A, Van Damme J, Martens L, Vandekerckhove J.
Four stage liquid chromatographic selection of methionyl peptides for peptide-centric proteome analysis: the proteome of human multipotent adult progenitor cells.
J Proteome Res. 2006 Jun; 5(6) : 1415-28. PMID: 16739993
Flikka K, Martens L, Vandekerckhove J, Gevaert K, Eidhammer I.
Improving the reliability and throughput of mass spectrometry-based proteomics by spectrum quality filtering.
Proteomics. 2006 Apr; 6(7): 2086-94. PMID: 16518876
Gevaert K, Van Damme P, Martens L, Vandekerckhove J.
Diagonal reverse-phase chromatography applications in peptide-centric proteomics: ahead of catalogue-omics?
Anal Biochem. 2005 Oct.1; 345(1): 18-29. Review. PMID: 16181830
Van Damme P, Martens L, Van Damme J, Hugelier K, Staes A, Vandekerckhove J, Gevaert K.
Caspase-specific and nonspecific in vivo protein processing during Fas-induced apoptosis.
Nat Methods 2005 Oct; 2(10): 771-7. PMID: 16179924
Gevaert K, Staes A, Van Damme J, De Groot S, Hugelier K, Demol H, Martens L, Goethals M, Vandekerckhove J.
Global phosphoproteome analysis on human HepG2 hepatocytes using reversed-phase diagonal LC.
Proteomics 2005 Sep; 5(14), 3589-99. PMID: 16097034
Martens L, Van Damme P, Van Damme J, Staes A, Timmerman E, Ghesquiere B, Thomas GR, Vandekerckhove J, Gevaert K.
The human platelet proteome mapped by peptide-centric proteomics: a functional protein profile.
Proteomics. 2005 Aug 5(12): 3193-3204, PMID: 16038019
Martens L, Vandekerckhove J, Gevaert K.
DBToolkit: processing protein databases for peptide-centric proteomics.
Bioinformatics. 2005 Sep 1;21(17):3584-5. PMID: 16030071
Meuleman P, Libbrecht L, De Vos R, de Hemptinne B, Gevaert K, Vandekerckhove J, Roskams T, Leroux-Roels G.
Morphological and biochemical characterization of a human liver in a uPA-SCID mouse chimera.
Hepatology. 2005 Apr;41(4):847-56. PMID: 15791625
Kas K.
On the technicalities of discovering and applying protein biomarkers for cancer prevention.
J Cancer Prev. 13, 437-446, 2004
Staes A, Demol H, Van Damme J, Martens L, Vandekerckhove J, Gevaert K.
Global differential non-gel proteomics by quantitative and stable labeling of tryptic peptides with oxygen-18.
J Proteome Res. 2004 Jul-Aug; 3(4) : 786-91. PMID: 15359732
Gevaert K, Ghesquiere B, Staes A, Martens L, Van Damme J, Thomas GR, Vandekerckhove J.
Reversible labeling of cysteine-containing peptides allows their specific chromatographic isolation for non-gel proteome studies.
Proteomics. 2004 Apr; 4(4): 897-908. PMID: 15048972
Gevaert K, Goethals M, Martens L, Van Damme J, Staes A, Thomas GR, Vandekerckhove J.
Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides.
Nat Biotechnology 2003 May; 21(5): 566-9. PMID: 12665801
Gevaert K, Van Damme J, Goethals M, Thomas GR, Hoorelbeke B, Demol H, Martens L, Puype M, Staes A, Vandekerckhove J.
Chromatographic isolation of methionine-containing peptides for gel-free proteome analysis: identification of more than 800 Escherichia coli proteins.
Mol Cell Proteomics. 2002 Nov; 1(11): 896-903. PMID: 12488465